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      <h1 id="full_list_header">Method List</h1>
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      <ul id="full_list" class="methods">
        

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Gene.html#all_xrefs-instance_method" title="Ensembl::Core::Gene#all_xrefs (method)">#all_xrefs</a></span> 
    
      <small>Ensembl::Core::Gene</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/SeqRegion.html#assembled_seq_regions-instance_method" title="Ensembl::Core::SeqRegion#assembled_seq_regions (method)">#assembled_seq_regions</a></span> 
    
      <small>Ensembl::Core::SeqRegion</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/SeqRegion.html#assembly_links_as_assembly-instance_method" title="Ensembl::Core::SeqRegion#assembly_links_as_assembly (method)">#assembly_links_as_assembly</a></span> 
    
      <small>Ensembl::Core::SeqRegion</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/SeqRegion.html#assembly_links_as_component-instance_method" title="Ensembl::Core::SeqRegion#assembly_links_as_component (method)">#assembly_links_as_component</a></span> 
    
      <small>Ensembl::Core::SeqRegion</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core.html#canonical_transcript-instance_method" title="Ensembl::Core#canonical_transcript (method)">#canonical_transcript</a></span> 
    
      <small>Ensembl::Core</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#cdna2genomic-instance_method" title="Ensembl::Core::Transcript#cdna2genomic (method)">#cdna2genomic</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#cds2genomic-instance_method" title="Ensembl::Core::Transcript#cds2genomic (method)">#cds2genomic</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#cds_seq-instance_method" title="Ensembl::Core::Transcript#cds_seq (method)">#cds_seq</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Collection.html#check-class_method" title="Ensembl::Core::Collection.check (method)">check</a></span> 
    
      <small>Ensembl::Core::Collection</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Variation/VariationFeature.html#check_aa_change-instance_method" title="Ensembl::Variation::VariationFeature#check_aa_change (method)">#check_aa_change</a></span> 
    
      <small>Ensembl::Variation::VariationFeature</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Variation/VariationFeature.html#check_intergenic-instance_method" title="Ensembl::Variation::VariationFeature#check_intergenic (method)">#check_intergenic</a></span> 
    
      <small>Ensembl::Variation::VariationFeature</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Variation/VariationFeature.html#check_non_coding-instance_method" title="Ensembl::Variation::VariationFeature#check_non_coding (method)">#check_non_coding</a></span> 
    
      <small>Ensembl::Variation::VariationFeature</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Variation/VariationFeature.html#check_splice_site-instance_method" title="Ensembl::Variation::VariationFeature#check_splice_site (method)">#check_splice_site</a></span> 
    
      <small>Ensembl::Variation::VariationFeature</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Variation/VariationFeature.html#check_upstream_downstream-instance_method" title="Ensembl::Variation::VariationFeature#check_upstream_downstream (method)">#check_upstream_downstream</a></span> 
    
      <small>Ensembl::Variation::VariationFeature</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Variation/VariationFeature.html#check_utr-instance_method" title="Ensembl::Variation::VariationFeature#check_utr (method)">#check_utr</a></span> 
    
      <small>Ensembl::Variation::VariationFeature</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#coding_region_cdna_end-instance_method" title="Ensembl::Core::Transcript#coding_region_cdna_end (method)">#coding_region_cdna_end</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#coding_region_cdna_start-instance_method" title="Ensembl::Core::Transcript#coding_region_cdna_start (method)">#coding_region_cdna_start</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#coding_region_genomic_end-instance_method" title="Ensembl::Core::Transcript#coding_region_genomic_end (method)">#coding_region_genomic_end</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#coding_region_genomic_start-instance_method" title="Ensembl::Core::Transcript#coding_region_genomic_start (method)">#coding_region_genomic_start</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Session.html#collection_species-instance_method" title="Ensembl::Session#collection_species (method)">#collection_species</a></span> 
    
      <small>Ensembl::Session</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/SeqRegion.html#component_seq_regions-instance_method" title="Ensembl::Core::SeqRegion#component_seq_regions (method)">#component_seq_regions</a></span> 
    
      <small>Ensembl::Core::SeqRegion</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Variation/DBConnection.html#connect-class_method" title="Ensembl::Variation::DBConnection.connect (method)">connect</a></span> 
    
      <small>Ensembl::Variation::DBConnection</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/DummyDBConnection.html#connect-class_method" title="Ensembl::DummyDBConnection.connect (method)">connect</a></span> 
    
      <small>Ensembl::DummyDBConnection</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/DBConnection.html#connect-class_method" title="Ensembl::Core::DBConnection.connect (method)">connect</a></span> 
    
      <small>Ensembl::Core::DBConnection</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Variation/TranscriptVariation.html#consequence_type-instance_method" title="Ensembl::Variation::TranscriptVariation#consequence_type (method)">#consequence_type</a></span> 
    
      <small>Ensembl::Variation::TranscriptVariation</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Variation/VariationFeature.html#consequence_type-instance_method" title="Ensembl::Variation::VariationFeature#consequence_type (method)">#consequence_type</a></span> 
    
      <small>Ensembl::Variation::VariationFeature</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Gap.html#coord_system-instance_method" title="Ensembl::Core::Gap#coord_system (method)">#coord_system</a></span> 
    
      <small>Ensembl::Core::Gap</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Session.html#coord_system_ids-instance_method" title="Ensembl::Session#coord_system_ids (method)">#coord_system_ids</a></span> 
    
      <small>Ensembl::Session</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Session.html#coord_systems-instance_method" title="Ensembl::Session#coord_systems (method)">#coord_systems</a></span> 
    
      <small>Ensembl::Session</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Variation/VariationFeature.html#core_connection-instance_method" title="Ensembl::Variation::VariationFeature#core_connection (method)">#core_connection</a></span> 
    
      <small>Ensembl::Variation::VariationFeature</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Variation/VariationFeature.html#custom_transcript_variation-instance_method" title="Ensembl::Variation::VariationFeature#custom_transcript_variation (method)">#custom_transcript_variation</a></span> 
    
      <small>Ensembl::Variation::VariationFeature</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#display_label-instance_method" title="Ensembl::Core::Transcript#display_label (method)">#display_label</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Gene.html#display_label-instance_method" title="Ensembl::Core::Gene#display_label (method)">#display_label</a></span> 
    
      <small>Ensembl::Core::Gene</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Translation.html#display_label-instance_method" title="Ensembl::Core::Translation#display_label (method)">#display_label</a></span> 
    
      <small>Ensembl::Core::Translation</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#display_name-instance_method" title="Ensembl::Core::Slice#display_name (method)">#display_name</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Gap.html#display_name-instance_method" title="Ensembl::Core::Gap#display_name (method)">#display_name</a></span> 
    
      <small>Ensembl::Core::Gap</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#dna_align_features-instance_method" title="Ensembl::Core::Slice#dna_align_features (method)">#dna_align_features</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/DBConnection.html#ensemblgenomes_connect-class_method" title="Ensembl::Core::DBConnection.ensemblgenomes_connect (method)">ensemblgenomes_connect</a></span> 
    
      <small>Ensembl::Core::DBConnection</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Variation/DBConnection.html#ensemblgenomes_connect-class_method" title="Ensembl::Variation::DBConnection.ensemblgenomes_connect (method)">ensemblgenomes_connect</a></span> 
    
      <small>Ensembl::Variation::DBConnection</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#excise-instance_method" title="Ensembl::Core::Slice#excise (method)">#excise</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#exon_for_cdna_position-instance_method" title="Ensembl::Core::Transcript#exon_for_cdna_position (method)">#exon_for_cdna_position</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#exon_for_genomic_position-instance_method" title="Ensembl::Core::Transcript#exon_for_genomic_position (method)">#exon_for_genomic_position</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#exons-instance_method" title="Ensembl::Core::Transcript#exons (method)">#exons</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#fetch_all-class_method" title="Ensembl::Core::Slice.fetch_all (method)">fetch_all</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Variation/Variation.html#fetch_all_by_source-class_method" title="Ensembl::Variation::Variation.fetch_all_by_source (method)">fetch_all_by_source</a></span> 
    
      <small>Ensembl::Variation::Variation</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#fetch_by_gene_stable_id-class_method" title="Ensembl::Core::Slice.fetch_by_gene_stable_id (method)">fetch_by_gene_stable_id</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#fetch_by_region-class_method" title="Ensembl::Core::Slice.fetch_by_region (method)">fetch_by_region</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#fetch_by_transcript_stable_id-class_method" title="Ensembl::Core::Slice.fetch_by_transcript_stable_id (method)">fetch_by_transcript_stable_id</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Variation/VariationFeature.html#fetch_region-instance_method" title="Ensembl::Variation::VariationFeature#fetch_region (method)">#fetch_region</a></span> 
    
      <small>Ensembl::Variation::VariationFeature</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/MiscFeature.html#find_all_by_attrib_type_value-class_method" title="Ensembl::Core::MiscFeature.find_all_by_attrib_type_value (method)">find_all_by_attrib_type_value</a></span> 
    
      <small>Ensembl::Core::MiscFeature</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/ExternalDb.html#find_all_by_display_label-class_method" title="Ensembl::Core::ExternalDb.find_all_by_display_label (method)">find_all_by_display_label</a></span> 
    
      <small>Ensembl::Core::ExternalDb</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Gene.html#find_all_by_name-class_method" title="Ensembl::Core::Gene.find_all_by_name (method)">find_all_by_name</a></span> 
    
      <small>Ensembl::Core::Gene</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Marker.html#find_all_by_name-class_method" title="Ensembl::Core::Marker.find_all_by_name (method)">find_all_by_name</a></span> 
    
      <small>Ensembl::Core::Marker</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#find_all_by_stable_id-class_method" title="Ensembl::Core::Transcript.find_all_by_stable_id (method)">find_all_by_stable_id</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Collection.html#find_all_coord_by_table_name-class_method" title="Ensembl::Core::Collection.find_all_coord_by_table_name (method)">find_all_coord_by_table_name</a></span> 
    
      <small>Ensembl::Core::Collection</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/MiscFeature.html#find_by_attrib_type_value-class_method" title="Ensembl::Core::MiscFeature.find_by_attrib_type_value (method)">find_by_attrib_type_value</a></span> 
    
      <small>Ensembl::Core::MiscFeature</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/ExternalDb.html#find_by_display_label-class_method" title="Ensembl::Core::ExternalDb.find_by_display_label (method)">find_by_display_label</a></span> 
    
      <small>Ensembl::Core::ExternalDb</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Marker.html#find_by_name-class_method" title="Ensembl::Core::Marker.find_by_name (method)">find_by_name</a></span> 
    
      <small>Ensembl::Core::Marker</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Gene.html#find_by_name-class_method" title="Ensembl::Core::Gene.find_by_name (method)">find_by_name</a></span> 
    
      <small>Ensembl::Core::Gene</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#find_by_stable_id-class_method" title="Ensembl::Core::Transcript.find_by_stable_id (method)">find_by_stable_id</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Exon.html#find_by_stable_id-class_method" title="Ensembl::Core::Exon.find_by_stable_id (method)">find_by_stable_id</a></span> 
    
      <small>Ensembl::Core::Exon</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Gene.html#find_by_stable_id-class_method" title="Ensembl::Core::Gene.find_by_stable_id (method)">find_by_stable_id</a></span> 
    
      <small>Ensembl::Core::Gene</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Translation.html#find_by_stable_id-class_method" title="Ensembl::Core::Translation.find_by_stable_id (method)">find_by_stable_id</a></span> 
    
      <small>Ensembl::Core::Translation</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/CoordSystem.html#find_default_by_name-class_method" title="Ensembl::Core::CoordSystem.find_default_by_name (method)">find_default_by_name</a></span> 
    
      <small>Ensembl::Core::CoordSystem</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/CoordSystem.html#find_level-instance_method" title="Ensembl::Core::CoordSystem#find_level (method)">#find_level</a></span> 
    
      <small>Ensembl::Core::CoordSystem</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/CoordSystem.html#find_seqlevel-instance_method" title="Ensembl::Core::CoordSystem#find_seqlevel (method)">#find_seqlevel</a></span> 
    
      <small>Ensembl::Core::CoordSystem</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/CoordSystem.html#find_toplevel-instance_method" title="Ensembl::Core::CoordSystem#find_toplevel (method)">#find_toplevel</a></span> 
    
      <small>Ensembl::Core::CoordSystem</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#five_prime_utr_seq-instance_method" title="Ensembl::Core::Transcript#five_prime_utr_seq (method)">#five_prime_utr_seq</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Variation/VariationFeature.html#flanking_seq-instance_method" title="Ensembl::Variation::VariationFeature#flanking_seq (method)">#flanking_seq</a></span> 
    
      <small>Ensembl::Variation::VariationFeature</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/DBRegistry/Base.html#generic_connect-class_method" title="Ensembl::DBRegistry::Base.generic_connect (method)">generic_connect</a></span> 
    
      <small>Ensembl::DBRegistry::Base</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#genomic2cdna-instance_method" title="Ensembl::Core::Transcript#genomic2cdna (method)">#genomic2cdna</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#genomic2cds-instance_method" title="Ensembl::Core::Transcript#genomic2cds (method)">#genomic2cds</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#genomic2pep-instance_method" title="Ensembl::Core::Transcript#genomic2pep (method)">#genomic2pep</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#get_genotyped_variation_features-instance_method" title="Ensembl::Core::Slice#get_genotyped_variation_features (method)">#get_genotyped_variation_features</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/DBRegistry/Base.html#get_info-class_method" title="Ensembl::DBRegistry::Base.get_info (method)">get_info</a></span> 
    
      <small>Ensembl::DBRegistry::Base</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/DBRegistry/Base.html#get_name_from_db-class_method" title="Ensembl::DBRegistry::Base.get_name_from_db (method)">get_name_from_db</a></span> 
    
      <small>Ensembl::DBRegistry::Base</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#get_objects-instance_method" title="Ensembl::Core::Slice#get_objects (method)">#get_objects</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Collection.html#get_species_id-class_method" title="Ensembl::Core::Collection.get_species_id (method)">get_species_id</a></span> 
    
      <small>Ensembl::Core::Collection</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#get_structural_variations-instance_method" title="Ensembl::Core::Slice#get_structural_variations (method)">#get_structural_variations</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#get_variation_features-instance_method" title="Ensembl::Core::Slice#get_variation_features (method)">#get_variation_features</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Gene.html#go_terms-instance_method" title="Ensembl::Core::Gene#go_terms (method)">#go_terms</a></span> 
    
      <small>Ensembl::Core::Gene</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Gene.html#hgnc-instance_method" title="Ensembl::Core::Gene#hgnc (method)">#hgnc</a></span> 
    
      <small>Ensembl::Core::Gene</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/ExternalDb.html#inheritance_column-class_method" title="Ensembl::Core::ExternalDb.inheritance_column (method)">inheritance_column</a></span> 
    
      <small>Ensembl::Core::ExternalDb</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Marker.html#inheritance_column-class_method" title="Ensembl::Core::Marker.inheritance_column (method)">inheritance_column</a></span> 
    
      <small>Ensembl::Core::Marker</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#initialize-instance_method" title="Ensembl::Core::Slice#initialize (method)">#initialize</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Session.html#initialize-instance_method" title="Ensembl::Session#initialize (method)">#initialize</a></span> 
    
      <small>Ensembl::Session</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Intron.html#initialize-instance_method" title="Ensembl::Core::Intron#initialize (method)">#initialize</a></span> 
    
      <small>Ensembl::Core::Intron</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Gap.html#initialize-instance_method" title="Ensembl::Core::Gap#initialize (method)">#initialize</a></span> 
    
      <small>Ensembl::Core::Gap</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Variation/StructuralVariation.html#instance_method_already_implemented%3F-class_method" title="Ensembl::Variation::StructuralVariation.instance_method_already_implemented? (method)">instance_method_already_implemented?</a></span> 
    
      <small>Ensembl::Variation::StructuralVariation</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#introns-instance_method" title="Ensembl::Core::Transcript#introns (method)">#introns</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#length-instance_method" title="Ensembl::Core::Slice#length (method)">#length</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Sliceable.html#length-instance_method" title="Ensembl::Core::Sliceable#length (method)">#length</a></span> 
    
      <small>Ensembl::Core::Sliceable</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#method_missing-instance_method" title="Ensembl::Core::Slice#method_missing (method)">#method_missing</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#misc_features-instance_method" title="Ensembl::Core::Slice#misc_features (method)">#misc_features</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Map.html#name-instance_method" title="Ensembl::Core::Map#name (method)">#name</a></span> 
    
      <small>Ensembl::Core::Map</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Marker.html#name-instance_method" title="Ensembl::Core::Marker#name (method)">#name</a></span> 
    
      <small>Ensembl::Core::Marker</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/CoordSystem.html#name_with_version-instance_method" title="Ensembl::Core::CoordSystem#name_with_version (method)">#name_with_version</a></span> 
    
      <small>Ensembl::Core::CoordSystem</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Intron.html#next_exon-instance_method" title="Ensembl::Core::Intron#next_exon (method)">#next_exon</a></span> 
    
      <small>Ensembl::Core::Intron</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#overlaps%3F-instance_method" title="Ensembl::Core::Slice#overlaps? (method)">#overlaps?</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#pep2genomic-instance_method" title="Ensembl::Core::Transcript#pep2genomic (method)">#pep2genomic</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Intron.html#previous_exon-instance_method" title="Ensembl::Core::Intron#previous_exon (method)">#previous_exon</a></span> 
    
      <small>Ensembl::Core::Intron</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#project-instance_method" title="Ensembl::Core::Slice#project (method)">#project</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Sliceable.html#project-instance_method" title="Ensembl::Core::Sliceable#project (method)">#project</a></span> 
    
      <small>Ensembl::Core::Sliceable</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#protein_align_features-instance_method" title="Ensembl::Core::Slice#protein_align_features (method)">#protein_align_features</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#protein_seq-instance_method" title="Ensembl::Core::Transcript#protein_seq (method)">#protein_seq</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#repeatmasked_seq-instance_method" title="Ensembl::Core::Slice#repeatmasked_seq (method)">#repeatmasked_seq</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Session.html#reset-instance_method" title="Ensembl::Session#reset (method)">#reset</a></span> 
    
      <small>Ensembl::Session</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#seq-instance_method" title="Ensembl::Core::Slice#seq (method)">#seq</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Exon.html#seq-instance_method" title="Ensembl::Core::Exon#seq (method)">#seq</a></span> 
    
      <small>Ensembl::Core::Exon</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Sliceable.html#seq-instance_method" title="Ensembl::Core::Sliceable#seq (method)">#seq</a></span> 
    
      <small>Ensembl::Core::Sliceable</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#seq-instance_method" title="Ensembl::Core::Transcript#seq (method)">#seq</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Intron.html#seq_region-instance_method" title="Ensembl::Core::Intron#seq_region (method)">#seq_region</a></span> 
    
      <small>Ensembl::Core::Intron</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#seq_region-instance_method" title="Ensembl::Core::Slice#seq_region (method)">#seq_region</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Intron.html#seq_region_end-instance_method" title="Ensembl::Core::Intron#seq_region_end (method)">#seq_region_end</a></span> 
    
      <small>Ensembl::Core::Intron</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Intron.html#seq_region_start-instance_method" title="Ensembl::Core::Intron#seq_region_start (method)">#seq_region_start</a></span> 
    
      <small>Ensembl::Core::Intron</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Intron.html#seq_region_strand-instance_method" title="Ensembl::Core::Intron#seq_region_strand (method)">#seq_region_strand</a></span> 
    
      <small>Ensembl::Core::Intron</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Session.html#seq_regions-instance_method" title="Ensembl::Session#seq_regions (method)">#seq_regions</a></span> 
    
      <small>Ensembl::Session</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/CoordSystem.html#seqlevel%3F-instance_method" title="Ensembl::Core::CoordSystem#seqlevel? (method)">#seqlevel?</a></span> 
    
      <small>Ensembl::Core::CoordSystem</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Session.html#seqlevel_coord_system-instance_method" title="Ensembl::Session#seqlevel_coord_system (method)">#seqlevel_coord_system</a></span> 
    
      <small>Ensembl::Session</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Session.html#seqlevel_id-instance_method" title="Ensembl::Session#seqlevel_id (method)">#seqlevel_id</a></span> 
    
      <small>Ensembl::Session</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/SeqRegion.html#sequence-instance_method" title="Ensembl::Core::SeqRegion#sequence (method)">#sequence</a></span> 
    
      <small>Ensembl::Core::SeqRegion</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Gap.html#size-instance_method" title="Ensembl::Core::Gap#size (method)">#size</a></span> 
    
      <small>Ensembl::Core::Gap</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/SeqRegion.html#slice-instance_method" title="Ensembl::Core::SeqRegion#slice (method)">#slice</a></span> 
    
      <small>Ensembl::Core::SeqRegion</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Sliceable.html#slice-instance_method" title="Ensembl::Core::Sliceable#slice (method)">#slice</a></span> 
    
      <small>Ensembl::Core::Sliceable</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Collection.html#species-class_method" title="Ensembl::Core::Collection.species (method)">species</a></span> 
    
      <small>Ensembl::Core::Collection</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#split-instance_method" title="Ensembl::Core::Slice#split (method)">#split</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Exon.html#stable_id-instance_method" title="Ensembl::Core::Exon#stable_id (method)">#stable_id</a></span> 
    
      <small>Ensembl::Core::Exon</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#stable_id-instance_method" title="Ensembl::Core::Transcript#stable_id (method)">#stable_id</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Translation.html#stable_id-instance_method" title="Ensembl::Core::Translation#stable_id (method)">#stable_id</a></span> 
    
      <small>Ensembl::Core::Translation</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Gene.html#stable_id-instance_method" title="Ensembl::Core::Gene#stable_id (method)">#stable_id</a></span> 
    
      <small>Ensembl::Core::Gene</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Sliceable.html#start-instance_method" title="Ensembl::Core::Sliceable#start (method)">#start</a></span> 
    
      <small>Ensembl::Core::Sliceable</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#start-instance_method" title="Ensembl::Core::Slice#start (method)">#start</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#stop-instance_method" title="Ensembl::Core::Slice#stop (method)">#stop</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Sliceable.html#stop-instance_method" title="Ensembl::Core::Sliceable#stop (method)">#stop</a></span> 
    
      <small>Ensembl::Core::Sliceable</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Sliceable.html#strand-instance_method" title="Ensembl::Core::Sliceable#strand (method)">#strand</a></span> 
    
      <small>Ensembl::Core::Sliceable</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#strand-instance_method" title="Ensembl::Core::Slice#strand (method)">#strand</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#sub_slice-instance_method" title="Ensembl::Core::Slice#sub_slice (method)">#sub_slice</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/SeqRegion.html#subsequence-instance_method" title="Ensembl::Core::SeqRegion#subsequence (method)">#subsequence</a></span> 
    
      <small>Ensembl::Core::SeqRegion</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Variation/StructuralVariation.html#sv_class-instance_method" title="Ensembl::Variation::StructuralVariation#sv_class (method)">#sv_class</a></span> 
    
      <small>Ensembl::Variation::StructuralVariation</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Transcript.html#three_prime_utr_seq-instance_method" title="Ensembl::Core::Transcript#three_prime_utr_seq (method)">#three_prime_utr_seq</a></span> 
    
      <small>Ensembl::Core::Transcript</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Xref.html#to_s-instance_method" title="Ensembl::Core::Xref#to_s (method)">#to_s</a></span> 
    
      <small>Ensembl::Core::Xref</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/MiscAttrib.html#to_s-instance_method" title="Ensembl::Core::MiscAttrib#to_s (method)">#to_s</a></span> 
    
      <small>Ensembl::Core::MiscAttrib</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/CoordSystem.html#toplevel%3F-instance_method" title="Ensembl::Core::CoordSystem#toplevel? (method)">#toplevel?</a></span> 
    
      <small>Ensembl::Core::CoordSystem</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Session.html#toplevel_coord_system-instance_method" title="Ensembl::Session#toplevel_coord_system (method)">#toplevel_coord_system</a></span> 
    
      <small>Ensembl::Session</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Session.html#toplevel_id-instance_method" title="Ensembl::Session#toplevel_id (method)">#toplevel_id</a></span> 
    
      <small>Ensembl::Session</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Variation/TranscriptVariation.html#transcript-instance_method" title="Ensembl::Variation::TranscriptVariation#transcript (method)">#transcript</a></span> 
    
      <small>Ensembl::Variation::TranscriptVariation</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Intron.html#transcript-instance_method" title="Ensembl::Core::Intron#transcript (method)">#transcript</a></span> 
    
      <small>Ensembl::Core::Intron</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Variation/VariationFeature.html#transcript_variations-instance_method" title="Ensembl::Variation::VariationFeature#transcript_variations (method)">#transcript_variations</a></span> 
    
      <small>Ensembl::Variation::VariationFeature</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Sliceable.html#transform-instance_method" title="Ensembl::Core::Sliceable#transform (method)">#transform</a></span> 
    
      <small>Ensembl::Core::Sliceable</small>
    
  </li>
  

  <li class="r2 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#variation_connection-instance_method" title="Ensembl::Core::Slice#variation_connection (method)">#variation_connection</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

  <li class="r1 ">
    <span class='object_link'><a href="Ensembl/Core/Slice.html#within%3F-instance_method" title="Ensembl::Core::Slice#within? (method)">#within?</a></span> 
    
      <small>Ensembl::Core::Slice</small>
    
  </li>
  

      </ul>
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